Use these reg keys to disable the Automatically Update option
reg.exe add “HKEY_LOCAL_MACHINE\Software\Microsoft\Internet Explorer\MAIN” /v EnableAutoUpgrade /t REG_DWORD /d 00000000 /f /reg:32
reg.exe add “HKEY_LOCAL_MACHINE\Software\Microsoft\Internet Explorer\MAIN” /v EnableAutoUpgrade /t REG_DWORD /d 00000000 /f /reg:64