When you are trying to use a 32 bit application and that application is trying to execute an action that calls a feature from System32 (on a 64bit system) you have to use a specific path.
Use the following path in your batch file:
%windir%\sysnative\application
Example
So, to enable Bitlocker on C: drive
%windir%\sysnative\Manage-BDE.exe -on c: